Documentation

Anatomia is an open-source pipeline that turns AI-generated code into verified code. It runs locally, installs as agents inside your repo, and produces a proof chain you can audit, replay, and trust — including the 213 proofs that built Anatomia itself.

213verified proofs
6sealed agents
41CLI commands
8stack-matched skills
MITfree forever

The pipeline at a glance

Every shipped change passes through four pipeline stages — Think, Plan, Build, and Verify — each a sealed agent with one job, specific inputs, and validated outputs. A fifth agent, Learn, tends the proof chain between cycles. What's left behind is permanent — the artifacts between stages are your team's engineering memory, auditable and replayable.

What's in these docs

The Reference section is auto-generated from the CLI source on every commit. Everything else is hand-written and reviewed.

Get started

Your first run

From zero to a working ana scan on your repo. No login. Two minutes to scaffold.

Guides

Doing the work

Recipes for the moves you’ll make, in the order you’ll need them.

Reference

Files & commands

Every CLI command, every template, every artifact format. The source of truth.

Where to start

Pick the door that matches what you're trying to do today.

Resources

From the proof chain

Anatomia is built with anatomia. 213 pipeline runs, 4,494 assertions, 1249 findings. These six show what the system produces.

ProofStageAssertionsFindings
security-hardening
Eliminate command injection across the CLIAll slug args validated before reaching shell. security
Commands27/2710pass
worktree-isolation
Isolate every pipeline run in its own worktreeLargest contract in the chain. 1 rejection cycle. infra
Commands45/459pass
proof-promote
Promote a finding into a skill ruleThe learning loop: finding → rule → better builds. cli
Commands30/305pass
v1-documentation-overhaul
Rewrite every public-facing document for v1README, CHANGELOG, CONTRIBUTING, ARCHITECTURE. infra
Commands33/348pass
add-project-kind-detection
Detect CLI, library, web app, API server, full-stackScan-time classifier. Findings later mechanically closed. engine
Engine16/167pass
cli-ux-polish
Make the first 10 minutes feel professionalHelp text, command grouping, jargon-free descriptions. cli
Commands19/194pass
6 of 213 proofs · curatedBrowse all 213